| Welcome! Latest update: January 2010 The second evaluation paper I submitted to NeuroImage regarding surface-based vs. volume-based brain image registration has been accepted and will soon be online! In July 2009, I received a 3-year R01 from the National Institutes of Mental Health to create a completely new version of Mindboggle (automated anatomical brain labeling software)! |
Contact
arno @ binarybottle.com
212-543-5821
Arno Klein
Asst. Professor of Clinical Neurobiology
Columbia University
New York State Psychiatric Institute
1051 Riverside Drive, Unit #42
NY, NY 10032
My node in the neurotree
Site content license
212-543-5821
Arno Klein
Asst. Professor of Clinical Neurobiology
Columbia University
New York State Psychiatric Institute
1051 Riverside Drive, Unit #42
NY, NY 10032
My node in the neurotree
Site content license
Publications
A reproducible evaluation of ANTs similarity metric performance in brain image registration
Brian B. Avants, Nicholas J. Tustison, Gang Song, Philip A. Cook, Arno Klein, and James C. Gee.
2010. accepted in NeuroImage. Evaluation of volume-based and surface-based brain image registration methods
Arno Klein, Satrajit S. Ghosh, Brian Avants, B.T.T. Yeo, Bruce Fischl,
Babak Ardekani, James C. Gee, J.J. Mann, Ramin V. Parsey.
2010. NeuroImage. 51: 214-220. [doi:10.1016/j.neuroimage.2010.01.091]Babak Ardekani, James C. Gee, J.J. Mann, Ramin V. Parsey.
[supplementary website]
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration
Arno Klein, Jesper Andersson, Babak A. Ardekani, John Ashburner, Brian Avants, Ming-Chang Chiang, Gary E. Christensen, D. Louis Collins, James Gee, Pierre Hellier, Joo Hyun Song, Mark Jenkinson, Claude Lepage, Daniel Rueckert, Paul Thompson, Tom Vercauteren, Roger P. Woods, J. John Mann, Ramin V. Parsey.
2009. NeuroImage. 46(3): 786-802. [doi:10.1016/j.neuroimage.2008.12.037][supplementary website]
A new method for assessing PET-MRI coregistration
Christine DeLorenzo, Arno Klein, Arthur Mikhno, Neil Gray, Francesca Zanderigo, J. John Mann, and Ramin V. Parsey.
2009. Proc. SPIE - Medical Imaging. 7259, 72592W. [doi:10.1117/12.812170]Caste-dependent sleep of worker honey bees
Barrett A. Klein, Kathryn M. Olzsowy, Arno Klein, Katharine M. Saunders, and Thomas D. Seeley.
2008. Journal of Experimental Biology. 211: 3028-3040. Relating vector ray-tracing equations for holograms of arbitrary shape and thickness
Arno Klein.
2008. Journal of the Optical Society of America A. 25(4): 979-983. "Information visualization" entry in: Erlhoff Michael, Marshall Tim, eds.
Design Dictionary: Perspectives on Design Terminology
Arno Klein and William Bevington.
2008. Basel, Boston, Berlin: Birkhauser Verlag. Mindboggle: Automated brain labeling with multiple atlases
Arno Klein, Brett Mensh, Satrajit Ghosh, Jason Tourville, and Joy Hirsch.
2005. BMC Medical Imaging. 5:7.Mindboggle: A scatterbrained approach to automate brain labeling
Arno Klein and Joy Hirsch.
2005. NeuroImage. 24(2): 261-280. Optics for full-parallax holographic stereograms
Michael A. Klug, Arno Klein, Wendy Plesniak, Adam Kropp and Benjie Chen.
1997. Proc. SPIE. 3011 (78) "Practical Holography XI" [doi:10.1117/12.271340]Conference presentations
Open labels: online feedback for a public resource of manually labeled brain images
Arno Klein, Tito Dal Canton, Satrajit S. Ghosh, Bennett Landman, Joel Lee, Andrew Worth.
2010. 16th Annual Meeting for the Organization of Human Brain Mapping. HBM2010 Poster
Evaluation of open-access, automated brain extraction methods
on multi-site multi-disorder data
Brian Avants, Arno Klein, Nicholas Tustison, Jue Woo, and James C. Gee.
2010. 16th Annual Meeting for the Organization of Human Brain Mapping. An evaluation of volume- and surface-based nonlinear registration of human brain MRI data
Arno Klein, Satrajit S. Ghosh, Brian Avants, Bruce Fischl, Thomas Yeo,
J. John Mann, Ramin V. Parsey.
2009. 15th Annual Meeting for the Organization of Human Brain Mapping. J. John Mann, Ramin V. Parsey.
HBM2009 Poster
Activity patterns in the brain: breaking up the problem into pieces
Arno Klein.
2004. International Conference on Complex Systems (ICCS2004 talk). Mindboggle: new developments in automated brain labeling
Arno Klein and Joy Hirsch.
2003. 9th Annual Meeting for the Organization of Human Brain Mapping. HBM2003 Poster
Fully-automated nonlinear labeling of human brain activity
Arno Klein and Joy Hirsch.
2002. 8th Annual Meeting for the Organization of Human Brain Mapping. HBM2002 Poster
Automatic labeling of brain anatomy and fMRI brain activity
Arno Klein and Joy Hirsch.
2001. 7th Annual Meeting for the Organization of Human Brain Mapping.HBM2001 Poster
Resume
Employment | 2007-present Assistant Professor of Clinical Neurobiology Division of Molecular Imaging and Neuropathology Columbia University, NY 2004-2007 Information Synthesis Theorist and Program Analyst (Complex data visualization) Parsons Institute for Information Mapping The New School, NY 2006-2008 Automated Graphics Engineer Deka Design 2004-2005 Researcher in brain imaging Columbia University, NY |
| Graduate | 1998-2004 Weill Medical College of Cornell University, NY Functional MRI Laboratory, Memorial Sloan-Kettering Cancer Center Functional MRI Research Center, Columbia University Ph.D. in Neuroscience, May, 2004 Thesis: Automated brain labeling with Mindboggle Invented Mindboggle software to automate anatomical labeling of human brain data 1996-1998 California Institute of Technology Computation and Neural Systems Program Tissue optics research and biophysical computer modeling 1994-1996 Massachusetts Institute of Technology Spatial Imaging Group, MIT Media Laboratory M.S. in Media Arts and Sciences, September 1996 Thesis: Dispersion Compensation for Reflection Holography |
Undergraduate | 1991-1993 University of Michigan (Ann Arbor) B.S. in Biopsychology, Perception and Cognition Studies, May 1993 Research assistant in the Kellogg Eye Institute Independent computer-generated holographic stereogram research 1990-1991 Waseda University (Tokyo, Japan) Japanese studies, International Division Independent autostereoscopic holography research, Tama Art College 1988-1990 University of Southern California (Los Angeles) Resident Honors Program scholar Research assistant in Hedco Neurosciences Independent display holography projects |
Mindboggle
http://www.mindboggle.info
Mindboggle is an automated approach to labeling the anatomy and functional activity of human brain imaging data.
I developed this software as part of my PhD thesis and have just received a 3-year R01 from the National Institutes of Mental Health to create a completely new version beginning in July of 2009...
I developed this software as part of my PhD thesis and have just received a 3-year R01 from the National Institutes of Mental Health to create a completely new version beginning in July of 2009...
InfoVis.info
http://www.infovis.info
InfoVis.info is a searchable database of information graphics from visitor submissions and numerous repositories on the internet. Part of my research program is to classify these and other information graphics according to a taxonomy I am developing.
Ellora Caves
http://www.elloracaves.org
My wife and I are collaborating with Professor Walter Spink of the University of Michigan to create the first comprehensive documentation of the Ellora cave temples. I took around 7,000 digital photographs and am constructing an online resource that will enable scholars and students to navigate the caves through these images, and later via the cave ground plans.
It was announced in December, 2008 by ArtStor.
It was announced in December, 2008 by ArtStor.
The Daily Photo Project
http://www.elloradaily.info
I'm taking a photograph of my daughter's face every day. I apply software I wrote to coregister the images by manually identified facial features and to create time-lapse animations.
Check the site for news coverage.
Check the site for news coverage.
Quotes over Time
http://www.qovert.info
Quotes over Time tracks the top-quoted people from Reuters Alertnet News on a range of topics, and presents their quotes on a timeline (for a pilot period of a few months).
Links
Arnold Klein Gallery - my parents' gallery of fine art
kaklein.com - my mother's portfolio
roomforcuriosity.blogspot.com - my mother's "room for curiosity" blog
lemmies.com - my parents' book "The Lemmies" online!
toadsonties.com - my mother's upcoming design business
korinthianviolins.com - my sister's violin shop
pupating.org - my brother's art portfolio / cultural entomology website
Brain images from around the world!
